Hi Cathy What version are you running? If 5.1 you will need Nick's updated recon-all Cheers Bruce
On Dec 3, 2012, at 5:33 AM, Catherine Bois <clb...@york.ac.uk> wrote: > Hi, > > I am currently in the process of reconstructing my brains after edits. > However, the brains keep being reconstructed with large portions of brain > missing/cerebellum missing; ie they are much worse than before I edited them. > However, I am sure that I have only put control points in white matter areas; > ie not partial volume, so I am very confused as to why this is happening; in > one brain for example I had not put any cotnrol points (only made a very > small white matter edit). Has this happened to anyone else before? Am i > somehow running the wrong command somewhere? Could the watershed be wrong in > the script, ie accidentally changed? > > Grateful for help, > > Regards Cathy > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
