Hello, I'm using Freesurfer on Windows 7 using VirtualBox. I want to import DICOM files based on the "FreeSurfer Troubleshooting Reconstruction Work Flow", but I'm facing problems. This is what I have done:
1. Tried to use the source command like this: source C:\FreeSurfer_data\SetUpFreeSurfer.csh But I got this error: C:FreeSurfer_dataSetUpFreeSurfer.csh" No such file or directory 2. Tried to change directory to my subjects directory like t this: cd C:\FreeSurfer_data But got this error: C:FreeSurfer_data" No such file or directory 3. Tried importing one subject like this: recon-all -i C:\FreeSurfer_data\DICOM2 -subjid subj2 However I get this error: ERROR: cannot find C:FreeSurfer_dataDICOM2 Linux FreeSurfer 2.6.28-11-generic #42-Ubuntu SMP Fri Apr 17 01:57:59 UTC 2009 i 686 GNU/Linux recon-all -s exited with ERRORS at Mon Nov 19 14:50:58 EST 2012 I tried the above commands with / (slash) instead of back slash but still got similar errors. I'd appreciate your help. Thanks, Negar Negar Memarian, MASc, PhD NSERC Postdoctoral Fellow Department of Neurology David Geffen School of Medicine at UCLA Tel: (310) 206-4178 Email: nmemar...@mednet.ucla.edu ________________________________ IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
