OK, I see the problem. I should have told you to put tkregsiter2.bin
into /apps/fs510/tktools/ (after making a copy of the one there).
doug
On 11/5/12 5:00 PM, Eric Cunningham wrote:
[e4fs@cluster bin]$ ls -l `which tkregister2.bin`
-rwxr-xr-- 1 jsadinol fs 21663433 May 22 2011 /apps/fs510/tktools/
tkregister2.bin
[e4fs@cluster bin]$ tkregister2 --all-info
ProgramName: tkregister2.in <http://tkregister2.in/> ProgramArguments:
--all-info ProgramVersion: $Name: stable5 $ TimeStamp:
2012/11/05-21:43:36-GMT BuildtimeStamp: May 22 2011 08:23:31 CVS:
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $User:
e4fs Machine: cluster.mrilab.net <http://cluster.mrilab.net/>
Playform: Linux PlatformVersion: 2.6.9-55.0.2.ELsmp CompilerName: GCC
CompilerVersion: 30400
fyi: /apps/fs510/ = $FREESURFER_HOME
i tried replacing this file in tktools with the new tkregister2.bin,
and i get a new error:
/lib64/tls/libc.so.6: version GLIBC_2.4 not found
On Mon, Nov 5, 2012 at 11:34 AM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
Can you send me the result of
ls -l `which tkregister2.bin`
and
tkregister2 --all-info
doug
On 11/05/2012 03:54 PM, Eric Cunningham wrote:
retried it, same error
new file is .bin, old file is tkregister2, no old
tkregister2.bin file appeared to be in the folder
$FREESURFER_HOME/bin
On Mon, Nov 5, 2012 at 10:49 AM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>> wrote:
I'm not sure that was the right thing to do. There should
be two
files:
tkregister2 and tkregister2.bin. tkregister2 is just a
script that
calls
tkregister2.bin after setting up some environment
variables. Try
keeping
the original file name.
doug
On 11/05/2012 03:43 PM, Eric Cunningham wrote:
> i am sure
> there is one irregularity, namely that the '.bin'
extension is
absent
> from our old file, so i renamed the new file without it (as
> tkregister2) and moved the other one to tkregister2_backup
>
> the command i listed from previous threads was given to
someone else
> from our lab (and probably worked), so it is likely that
the problem
> is somewhere on our side, i was just hoping that it was
known and
> recognizable from the error
>
>
>
> On Mon, Nov 5, 2012 at 10:15 AM, Douglas N Greve
> <gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>>> wrote:
>
> are you sure you are using the new version?
>
>
> On 11/05/2012 02:38 PM, Eric Cunningham wrote:
>
> tried the new version, and it errored out at the
same step
>
> ERROR: Option --lta-inv unknown
>
> thanks again for your help!
>
> On Mon, Nov 5, 2012 at 8:16 AM, Douglas N Greve
> <gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>>
> <mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
> <mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>>>> wrote:
>
> Try using this version
>
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/tkregister2.bin
> copy it into $FREESURFER_HOME/bin (but make
a back up of
> the existing
> tkregister2.bin first!)
> doug
>
> On 11/02/2012 03:58 PM, Eric Cunningham wrote:
> > Hi folks,
> > In previous threads, the command provided to check the
> talairach.lta is...
> > tkregister2 --mov
$FREESURFER_HOME/average/RB_all_2008-03-26.gca
> \ --targ ../brainmask.mgz --lta-inv
talairach.lta --reg
> talairach.lta.reg.dat \ --surfs --s $subject
> >
> > When I try to run this command, I run into trouble
with the
> --lta-inv
> > portion. (it is an unknown option). I am running
version 5.1.
> > Can anyone help?
> > Thanks,
> > -Eric
> >
> >
> > _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
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<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> <mailto:Freesurfer@nmr.mgh.harvard.edu
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<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>
> >
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>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
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<mailto:gr...@nmr.mgh.harvard.edu>>>
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<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>>>
> Phone Number: 617-724-2358
<tel:617-724-2358> <tel:617-724-2358 <tel:617-724-2358>>
<tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
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<tel:617-726-7422>>> <tel:617-726-7422 <tel:617-726-7422>
<tel:617-726-7422 <tel:617-726-7422>>
> <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422
<tel:617-726-7422>>>>
>
> Bugs:
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>
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>
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> The information in this e-mail is intended
only for the
> person to
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> addressed. If you believe this e-mail was
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
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> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
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>
<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
<mailto:gr...@nmr.mgh.harvard.edu
<mailto:gr...@nmr.mgh.harvard.edu>>
Phone Number: 617-724-2358 <tel:617-724-2358>
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--
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
Phone Number: 617-724-2358 <tel:617-724-2358>
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