Sorry, I do not seem to see the light. I have a point in volume index coordinates [128.9 172 62.9 1] and need to obtain the surface/vertex RAS coordinates (not volume RAS).
matlab path /usr/local/freesurfer/subjects/subjid/mri if I type tkrRAS = Torig*[128.9 172 62.9 1]' it tells me Torig undefined function or variable If I try to define it with Torig: mri_info --vox2ras-tkr orig.mgz, it does not recognize mri_info Nothing happens if I work from the freesurfer command window: - Torig = mri_info --vox2ras-tkr orig.mgz - tkrRAS = Torig*[128.9 172 62.9 1]' I do not want to use tkmedit/tksurfer clicking since I plan doing this transform for a list of points. I know this is boringly basic but I am stuck, please advise. Octavian >__________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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