It still does not find the file.
[shimshon:TrioTim-35101-20120912-135155-195000] (nmr-stable5.0-env) recon-all -i ./cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358 -i ./cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214340478463998836 -s 39_bay6 ERROR: cannot find ./cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358 Linux shimshon 2.6.18-308.13.1.el5 #1 SMP Tue Aug 21 17:10:18 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux recon-all -s exited with ERRORS at Fri Sep 14 13:32:22 EDT 2012 > > /cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358 > > > > On 09/14/2012 01:01 PM, Eiran Vadim Harel wrote: >> Hi, >> >> 3 T1_MPRAGE_sag_short 3.39 2430 7 unknown ROW 190 >> /cluster/archive/301/siemens/TrioTim-35101-20120912-135155-195000/MR.1.3.12.2.1107.5.2.32.35101.3.2012091214284986179598358 >> >> >> This is what it gives me when i do dcmunpack. What shall i use as the >> file >> indicator in the recon-all -i ./.... >> Thanks! >> eiran >> >> >> >> >>> You'll need to run dcmunpack without the -martinos flag. This will >>> (eventually) give you a list of runs and corresponding file names. Find >>> the one that is the MPRAGE you want to recon, and pass that as -i to >>> recon-all. Unfortunately the name change makes it harder/slower to >>> unpack data here. >>> doug >>> >>> On 09/14/2012 11:06 AM, Eiran Vadim Harel wrote: >>>> Hi all, >>>> Is there a change in the unpacking of the MPRAGE and DICOM files? >>>> The names of the files have changed. >>>> what file name should be put in the command: >>>> recon-all -i./file name -s subjectname >>>> Thanks, >>>> Eiran >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
