Hello,
I have several patients scans taken over multiple time points (up to nine time
points in some patients). I thought I might be able to use these to create a
base template for longitudinal processing, however the process fails and exits
with errors if I try to create a base with more than two time points from a
patient.
This is a sample of the error log of the most recent attempt, with three
timepoints:
Resolution: 1 S( 128 128 128 ) T( 128 128 128 ) Iteration(f): 1 -- diff.
to prev. transform: 0.876663 Iteration(f): 2 -- diff. to prev. transform:
0.0148738 Iteration(f): 3 -- diff. to prev. transform: 0.00156813 < 0.01
:-)
Resolution: 0 S( 256 256 256 ) T( 256 256 256 ) Iteration(f): 1 -- diff.
to prev. transform: 0.263086 Iteration(f): 2mri_robust_template(1035) malloc:
*** mmap(size=262144) failed (error code=12)*** error: can't allocate region***
set a breakpoint in malloc_error_break to debugMRIalloc(256, 256, 256): could
not allocate 262144 bytes for 68th slice
Cannot allocate memoryDarwin 550D-UOM88670.local 10.8.0 Darwin Kernel Version
10.8.0: Tue Jun 7 16:32:41 PDT 2011; root:xnu-1504.15.3~1/RELEASE_X86_64 x86_64
recon-all -s KSx3 exited with ERRORS at Mon Jul 23 10:15:13 EST 2012
For more details, see the log file
/Applications/freesurfer/subjects/KSx3/scripts/recon-all.logTo report a
problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I would be grateful for any advice.
Regards,
EA Bowman
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
