that looks right except "--surfreg sphere" should be "--surfreg fsaverage_sym.sphere.reg" Where did you get those instructions? Did I send them out before? doug
On 07/16/2012 01:32 PM, Irene Altarelli wrote: > Dear Doug, > > thanks for your answer. I guess I got confused by the output of the > interhemispheric registration. > > So, to be sure I understood correctly: are you suggesting that I should > > 1) run > mri_label2label --srcsubject suj1 --trgsubject suj1/xhemi --srclabel > $SUBJECT_DIR/suj1/label/lh.mylabel.label --trglabel > $SUBJECT_DIR/suj1/xhemi/label/lh.mylabel.label --regmethod surface > --surfreg sphere --hemi lh > > 2) copy the newly created label /suj1/xhemi/label/lh.mylabel.label to > suj1/label/rh.mylabel.label and calculate stats from that one? > > Thanks again! > Have a nice day, > Irene > > > Le lundi 16 juillet 2012 à 10:49 -0400, Douglas N Greve a écrit : >> Hi Irene, what are the instructions you are following? If you have >> mapped the lh.roi to the LH of the xhemi subject (making it the RH), >> then you can copy it to subject/label/rh.roi and run the normal stats. >> doug >> >> On 07/09/2012 04:31 AM, Irene Altarelli wrote: >>> Dear all, >>> >>> I have a ROI on the left hemisphere and I'd like to extract cortical >>> thickness values from the homologous region in the right hemisphere. For >>> this I applied the interhemispheric registration process and got my ROI >>> mapped into the right hemisphere in /subject/xhemi/label. >>> However when I tried to run mris_anatomical_stats on /subject/xhemi it >>> failed, as there is no wm.mgz file in /subject/xhemi/mri. >>> >>> Any suggestion would be greatly appreciated. >>> >>> Thank you, >>> Irene >>> >>> >>> >>> -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
