Anne, It looks like the diagnosis.levels file has 'MApsychosis' as a level but the error message says 'Psychosis', so they would need to match.
Nick On Tue, 2012-07-03 at 15:51 +0200, Anne Uhlmann wrote: > Hello FreeSurfers, > > I have a similar problem as described in an old thread > (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg12357.html) - > qdec doesn't read my factor.levels properly. > I have checked the files with gedit and can't see any control > characters, which might have caused the problem. > Any other ideas? I have also attached the diagnosis.levels file > > Thank you! > Anne > > Using /home/virtualuser/freesurfer/lib/tcl/fsgdfPlot.tcl > Loading data > table /media/MyPassport_/poster/qdec/insula.qdec.table.dat... > Number of columns: 3 > fsid column: 1 > Number of factors: 2 > Number of subjects: 18 > Reading discrete factor levels from config > file /media/MyPassport_/poster/qdec/diagnosis.levels > Psychosis > Control > done. > ERROR: Subject MAS082 has an invalid level 'Psychosis' in the > diagnosis column > INFO: If 'diagnosis' is a discrete factor, then create a file > named 'diagnosis.levels' containing the valid factor names > one per line. > > > Cape Universities Brain & Behaviour Initiative > Department of Psychiatry & Mental Health > University of Cape Town > Tel: 021 406 6843 > > > ### > > UNIVERSITY OF CAPE TOWN > > This e-mail is subject to the UCT ICT policies and e-mail disclaimer > published on our website at > http://www.uct.ac.za/about/policies/emaildisclaimer/ or obtainable > from +27 21 650 9111. This e-mail is intended only for the person(s) > to whom it is addressed. If the e-mail has reached you in error, > please notify the author. If you are not the intended recipient of the > e-mail you may not use, disclose, copy, redirect or print the content. > If this e-mail is not related to the business of UCT it is sent by the > sender in the sender's individual capacity. > > ### > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
