not really, sorry.
On Sun, 1 Jul 2012, Andrew R. Dykstra wrote:
Thanks Bruce. I'll give that a try. But it seems strange to me that after
processing different subjects with autorecon1 that the transform info would
be missing from the header of some subjects but not others. Can you think
of any reason why this might happen?
Cheers,
Andy
On Sun, Jul 1, 2012 at 4:16 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Andrew
try running:
mri_add_xform_to_header -c \
$SUBJECTS_DIR/$subject/mri/transforms/talairach.xfm \
$SUBJECTS_DIR/$subject/mri/orig.mgz \
$SUBJECTS_DIR/$subject/mri/orig.mgz
or whatever volume (instead of orig.mgz) you were viewing in
tkmedit. This
gets done automatically during the recon-all process, but
possibly you
skipped that step.
cheers
Bruce
On
Sun, 1 Jul 2012, Andrew R. Dykstra wrote:
> Dear Freesurfers,
> I am experiencing a strange issue when processing some, but
not all,
> subjects with the recommended recon stream. After autorecon1,
which
> includes Talairach registration step, I cannot see Talairach
coordinates in
> the tkmedit interface ('none' appears in the text box where
the coordinates
> usually are - attached screenshot). This is despite the
registration step
> supposedly succeeding (I can view and adjust the reg with
tkregister2). I
> think this may be causing further problems when trying to
compute the
> forward solution in MNE (I get messages there about not being
able to read
> the coordinate transformation). Has anyone experienced an
issue like this?
>
> Cheers,
> Andy
>
> --
> Andrew R. Dykstra, PhD Auditory Cognition Lab
> Neurologie und Poliklinik
> Universitätsklinikum Heidelberg
> Im Neuenheimer Feld 400
> 69120 Heidelberg
>
> "How small the cosmos. How paltry and puny compared to human
consciousness
> . . . to a single individual recollection." - Vladimir Nabokov
>
>
>
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Andrew R. Dykstra, PhDAuditory Cognition Lab
Neurologie und Poliklinik
Universitätsklinikum Heidelberg
Im Neuenheimer Feld 400
69120 Heidelberg
"How small the cosmos. How paltry and puny compared to human consciousness
. . . to a single individual recollection." - Vladimir Nabokov
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