Hi Priti, thank you for your reply, but I'm afraid you didn't scroll to the end of the log file: Yes, we had that bvecs/bvals error in the first run, but we corrected it and got the error I reported in my previous mail (it is also printed at the end of the log file):
ERROR: Could not open /Users/torben/Desktop/tracon/fs_diff/s001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt Could you or anybody else please help with this problem which is obviously related to missing tracts? Thanks in advance Torben > Hi Torben, > > Your trac-preproc exited with errors because of the following error. > > Error: bvecs and bvals don't have the same number of entries > > You should check to see if your bvals and bvecs have the same no.of lines > and then rerun trac-all -prep. > > Priti > > >> Dear all, >> >> while running trac-all, I got the following error: >> >> ERROR: Could not open >> /Users/torben/Desktop/tracon/fs_diff/s001/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt >> >> Obviously, a similar problem was discussed before (here: >> https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2011-August/019570.html). >> However, no general solution was publicly mailed. Since it was requested >> then, I attach the trac-all.log file. >> >> Thanks in advance for any help! >> >> Best >> Torben Prokscha >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
