Use mris_preproc to collect your normal subjects into a single file. Then use mri_concat to compute the mean and stddev of your normals mri_concat file.mgh --mean mean.mgh mri_concat file.mgh --std std.mgh Then compute a z-score for your subject (after transforming to fsaverage space): fscalc subject.mgh sub mean.mgh div std.mgh -o z.mgh Visualize tksurfer fsaverage lh inflated -overlay z.mgh
On 06/13/2012 11:26 AM, Shantanu Ghosh wrote: > Hi FS experts, > > Sorry if this is a newbie question. > > I want to display how an individual patient's crtical thickness varies > from the normal group average, vertex-by-vertex. What is the commandline > to do that? I want to display the overlay on MNI152 instead of fsaverage. > > Thanks in advance, > Shantanu > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
