Hi Knut, you can copy the following file into $FREESURFER_HOME/bin/mri_segstats ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_segstats.linux (assuming you're using linux) The run recon-all -segstats -s subject This will create a new aseg.stats file with total brain volume based on adding up the values in the segmentation. doug
On 06/04/2012 05:20 AM, Knut J Bjuland wrote: > Hello, > > We would like to calculate a Total Brain Volume based on data in > aseg.stat generated from version 5.1.0. Can I use intra crainal volume > as estimated for total brain volume? Or should I just add total grey > volume with subcortical grey volume with total white matter volume? > > Thanks, > Knut Jørgen > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
