Hi Martina you can use mri_binarize --match 17 --match 18... to do this. cheers Bruce
On Thu, 24 May 2012, Martina Papmeyer wrote: > Hello everyone, > > I guess that this might be a simple question but I couldn't find an > answer to my problem yet. > > I would like to extract and visualize four labels from my aseg.mgz > file for illustration purposes. I tried the following: > > mri_extract_label aseg.mgz 17 18 53 54 filename.mgz > > (the values correspond to left/right amygdala and left/right > hippocampus as specified in FreeSurferColorLUT.txt file) > > This command unfortunately combines all the four selected labels > together so that I can't differentiate amygdala and hippocampus > anymore when I load the filename.mgz file together with my > FreeSurferColorLUT.txt file in tkmedit. > > Is there any other FS tool I can use? > > Any form of help would be highly appreciated! > > Many thanks and all best wishes, Martina > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
