If you just run selxavg3-sess, it will do the processing. If you want to run preproc-sess separately, then you can specify -per-session instead of -per-run to get things in native space. doug
On 05/02/2012 02:55 PM, Maya Rosen wrote: > > Hi Doug, > Ok I see the -native flag in mkanalysis. But there is no -native flag > in preproc-sess. How do I go about preprocessing and analyzing the > data all in native volume space? > Thanks for your help, > Maya > > On Apr 26, 2012 4:39 PM, "Douglas N Greve" <gr...@nmr.mgh.harvard.edu > <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > There is (or should be) a -native flag to mkanalysis-sess > doug > > On 04/26/2012 11:09 AM, Maya Rosen wrote: > > Hi all, > > In v5.1.0 is there a way to do a volume analysis in native > space? I know when you do mkanalysis for the surface you can > use -surface self. But for the volume analysis the only flag I > see is -mni305. Is there some way to give it a native space > flag for the volume? > > Thanks! > > > Maya > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
