It might take me a little longer because our data is organized a little differently, but I will definitely check it out in tksurfer and get back to you on this.
On 4/24/12 3:12 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >Hi Sarah > >can you look at the aparc.a2009s.annot in tksurfer and see if it looks >right? > >Bruce >On Tue, 24 Apr 2012, Baum, Sarah H wrote: > >> Hi, >> >> Currently it's not doing that. I'm using the aparc.a2009s_rank file that >> I've aligned to the anatomy with @SUMA_AlignToExperiment. >> >> >> >> >> >> On 4/24/12 2:45 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >> >>> Hi Sarah >>> >>> what parcellation do you mean? Our standard anatomically-based >>> parcellatinos will color the same parcels the same color. >>> >>> cheers >>> Bruce >>> On Tue, 24 Apr >>> 2012, Baum, Sarah H wrote: >>> >>>> Hi- >>>> >>>> I'm looking to compare two parcellations (one is a stroke patient with >>>> her brain as is, the other is the same subject with the lesion "fixed" >>>> run as a separate subject). It would be helpful if the parcellations >>>> would color the same area the same color, but currently every single >>>>ROI >>>> is colored differently than the corresponding parcellation in the >>>>other >>>> subject's brain. I looked up the color table in the .annot file, and >>>>the >>>> RGB coordinates listed for each region are exactly the same for each >>>> surface volume. Is there any easy way to make the colors the same? >>>> >>>> If it helps? I use AFNI/SUMA for visualizing data. >>>> >>>> Thanks in advance, >>>> Sarah >>>> >>>> >>>> Sarah H. Baum >>>> Ph.D. Candidate, Neuroscience >>>> sarah.h.b...@uth.tmc.edu >>>> w: 713.500.5089 >>>> c: 571.225.7007 >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> >>> >>> The information in this e-mail is intended only for the person to whom >>>it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
