Hi Kourosh, you can ask the freesurfer list for these kind of questions. I believe that the ras coordinates are not changed, so reslicing everyhting as the original inputs will be sufficient (no transform, only based on the header information) e.g. mri_convert -rt nearest -rl youroriginialinput.mgz labels.mgz labelsinorig.mgz if it is labels (e.g. aseg.mgz) you are mapping, use nearest neighbor, else use -rt cubic (in the dev version) in stable versions (5.1 and earlier) just stick with linear (default).
Best, Martin ----- Original Message ----- From: "Kourosh Jafari-Khouzani" <kjaf...@nmr.mgh.harvard.edu> To: "Martin Reuter" <mreu...@nmr.mgh.harvard.edu> Sent: Thursday, April 19, 2012 10:04 AM Subject: Question about FreeSurfer > Hi Martin, > > I have a question about FreeSurfer subcortical segmentation: FreeSurfer > reslices an image and makes the voxel 1 mm isotropic and then segments it. > Is there a command to map the labels back to the original image? > > In case you don't know the answer, do you know anyone who may know it? > > Thanks! > Kourosh > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
