mris_calc should do what you want (although the aseg is not zero in the
cortex, so you will change the cortical labels)
cheers
Bruce
On Sat, 14 Apr 2012, Adil
Javed wrote:
Hi,
Is there a way to subtract segmented files in freesurfer? For example,
aparc+aseg.mgz - aseg.mgz= aparc.mgz only? I am interested in looking only
at the cortex. I find that label to volume conversion doesn't give me a
nice segmented cortex, with some patchy areas of intensities lost.
thanks,
AJ
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