-------- 转发邮件信息 --------
发件人："传玺" <shandongren2...@163.com>
发送日期：2012-04-11 19:26:41
收件人：freesurfer <freesurfer@nmr.mgh.harvard.edu>
主题：[Freesurfer] consult
Dear FS expert：
Today i put two contrast in the file {subjects},and run the command line
"recon-all -s mgz -all", several minutes later,the terminal tells error,it says:
[brain@localhost ~]$ recon-all -s mgz -all
Subject Stamp: freesurfer-Linux-centos4-stable-pub-v5.1.0
Current Stamp: freesurfer-Linux-centos4-stable-pub-v5.1.0
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects
Actual FREESURFER_HOME /usr/local/freesurfer
Linux localhost.localdomain 2.6.25-14.fc9.i686 #1 SMP Thu May 1 06:28:41 EDT
2008 i686 i686 i386 GNU/Linux
#--------------------------------------------
#@# MotionCor Wed Apr 11 17:49:05 HKT 2012
Found 3 runs
/usr/local/freesurfer/subjects/mgz/mri/orig/002.mgz
/usr/local/freesurfer/subjects/mgz/mri/orig/003.mgz
/usr/local/freesurfer/subjects/mgz/mri/orig/004.mgz
Checking for (invalid) multi-frame inputs...
Checking for (invalid) multi-frame inputs...
Checking for (invalid) multi-frame inputs...
#-----------------------------------------------
/usr/local/freesurfer/subjects/mgz
mri_robust_template --mov /usr/local/freesurfer/subjects/mgz/mri/orig/002.mgz
/usr/local/freesurfer/subjects/mgz/mri/orig/003.mgz
/usr/local/freesurfer/subjects/mgz/mri/orig/004.mgz --average 1 --template
/usr/local/freesurfer/subjects/mgz/mri/rawavg.mgz --satit --inittp 1 --fixtp
--noit --iscale --iscaleout
/usr/local/freesurfer/subjects/mgz/mri/orig/002-iscale.txt
/usr/local/freesurfer/subjects/mgz/mri/orig/003-iscale.txt
/usr/local/freesurfer/subjects/mgz/mri/orig/004-iscale.txt --subsample 200
--lta /usr/local/freesurfer/subjects/mgz/mri/orig/002.lta
/usr/local/freesurfer/subjects/mgz/mri/orig/003.lta
/usr/local/freesurfer/subjects/mgz/mri/orig/004.lta
$Id: mri_robust_template.cpp,v 1.37 2011/03/02 00:04:24 nicks Exp $
--mov: Using /usr/local/freesurfer/subjects/mgz/mri/orig/002.mgz as
movable/source volume.
--mov: Using /usr/local/freesurfer/subjects/mgz/mri/orig/003.mgz as
movable/source volume.
--mov: Using /usr/local/freesurfer/subjects/mgz/mri/orig/004.mgz as
movable/source volume.
Total: 3 input volumes
--average: Using method 1 for template computation.
--template: Using /usr/local/freesurfer/subjects/mgz/mri/rawavg.mgz as template
output volume.
--satit: Will estimate SAT iteratively!
--inittp: Using TP 1 as target for initialization
--fixtp: Will map everything to init TP!
--noit: Will output only first template (no iterations)!
--iscale: Enableing intensity scaling!
--iscaleout: Will perform intensity scaling and output results
--subsample: Will subsample if size is larger than 200 on all axes!
--lta: Will output LTA transforms
reading source '/usr/local/freesurfer/subjects/mgz/mri/orig/002.mgz'...
reading source '/usr/local/freesurfer/subjects/mgz/mri/orig/003.mgz'...
reading source '/usr/local/freesurfer/subjects/mgz/mri/orig/004.mgz'...
MultiRegistration::initializing Xforms (init 1 , maxres 0 , iterate 5 , epsit
0.01 ) :
[init] ========================= TP 2 to TP 1 ==============================
Register TP 2 ( /usr/local/freesurfer/subjects/mgz/mri/orig/003.mgz )
to TP 1 ( /usr/local/freesurfer/subjects/mgz/mri/orig/002.mgz )
Registration::setSourceAndTarget ...
Mov: (0.4688, 0.4688, 1.19996)mm and dim (512, 512, 156)
Dst: (0.4688, 0.4688, 1.20005)mm and dim (512, 512, 156)
Asserting both images: 0.4688mm isotropic and (512, 512, 400) voxels
Original : (0.4688, 0.4688, 1.19996) mm size and (512, 512, 156) voxels.
Resampled: (0.4688, 0.4688, 0.4688) mm size and (512, 512, 400) voxels.
Reslicing using trilinear interpolation
Original : (0.4688, 0.4688, 1.20005) mm size and (512, 512, 156) voxels.
Resampled: (0.4688, 0.4688, 0.4688) mm size and (512, 512, 400) voxels.
Reslicing using trilinear interpolation
Registration::findSaturation
- Gaussian Pyramid
MRIalloc(512, 512, 400): could not allocate 1048576 bytes for 367th slice
Cannot allocate memory
Linux localhost.localdomain 2.6.25-14.fc9.i686 #1 SMP Thu May 1 06:28:41 EDT
2008 i686 i686 i386 GNU/Linux
recon-all -s mgz exited with ERRORS at Wed Apr 11 17:51:20 HKT 2012
For more details, see the log file
/usr/local/freesurfer/subjects/mgz/scripts/recon-all.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
could you tell me what is wrong in the process? Thank you very much.
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_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
