Hi Doug,
These are Siemens DICOMs and I really don't know what happened
to these T1 files, we just got them in this format. Only one out of 32
datasets went wrong, so I consider it as an incident. The workaround
with dcm2nii worked fine. Nevertheless, if you are interested I can
upload the dataset.
Ed
On 28 Mar 2012, at 15:47, freesurfer-requ...@nmr.mgh.harvard.edu wrote:
Message: 2
Date: Tue, 27 Mar 2012 12:14:11 -0400
From: Douglas N Greve <gr...@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Failure to convert DICOM files
To: freesurfer@nmr.mgh.harvard.edu
Message-ID: <4f71e753.3040...@nmr.mgh.harvard.edu>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
Is it a siemens dicom? If so, what happened to the ascii header?
Did you
do something to the file? What are the contents of the image? Eg, a
T1?
doug
On 03/27/2012 05:35 AM, Ed Gronenschild wrote:
Hi,
I got an error during the first step in recon-all (Mac OS 10.6.8,
FreeSurfer v5.1.0). The eror message in the log file is:
WARNING: file ...../MR.
1.3.12.2.1107.5.2.18.41016.201008031106017688438785.dcm does not
contain a Siemens ASCII header
has this file been anonymized?
ERROR: cannot unpack mosiacs without ASCII header.
This is strange because it is no mosaic file and all the files can
be converted
without any problems with e.g., dcm2nii and viewed with OSIRIX.
Cheers,
Ed
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
