hi doug, here is the error, it told me there was a problem in an if statement somewhere.
if you use smooth = 2.0 instead of 2 you will get the error. cheers, satra --- [snip] fslmerge -t /mindhive/gablab/users/keshavan/scripts/BrainImagingPipeline s/utils/test/fmunwarp/temp/ph.nii.gz /mindhive/gablab/users/keshava n/scripts/BrainImagingPipelines/utils/test/fmunwarp/temp/ph.zeros.nii.gz /mindhive/gablab/users/keshavan/scripts/BrainImagingPipelines/utils/test/fm unwarp/temp/dph Masking with /mindhive/gablab/users/keshavan/scripts/BrainImagingPipeline s/utils/test/fmunwarp/temp/brain.nii.gz Standard error: if: Badly formed number. Return code: 1 Interface EPIDeWarp failed to run. --- On Mon, Mar 26, 2012 at 10:39 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > wrote: > what does it do? What is the terminal output? > > Satrajit Ghosh wrote: > >> epidewarp.fsl does not take non-integer smoothing kernel sizes. >> >> cheers, >> >> satra >> >> ------------------------------**------------------------------** >> ------------ >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: > surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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