Why don't you upload the subject and we'll take a look
On Mar 21, 2012, at 8:24 PM, Vincent <cloud....@gmail.com> wrote: > Hi, > > I have an image that is completing the skull strip with a lot of skull > remaining and it is have a large effect on the surfaces. I've tried lowering > the watershed threshold as low as 5 and I've tried adding the -gcut option, > but the low threshold by itself does not eliminate the skull and gcut not > only fails to remove the skull but it removes cerebellum as well. There is > so much skull left that I am hesitant to try manual edits, but I don't know > any other options. Are there any? By the way, this brain is from an older > individual with pretty substantial atrophy. > > > --Vincent > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
