Dear All,
1)I would like to know what is the best way in catching the uncorrected
clusters results from the sig.mgh for a structural study:
Should I use the:
mri_glmfit-sim \
--glmdir lh.GroupAnalysis_Thickness_15.glmdir \
--cache 2 pos \
--cwpvalthresh .99 \
--overwrite
But in this case I am not getting all the clusters regarding their significance
after correction by multiple comparison? I don't want the clusters from
multiple comparisons just the uncorrected one.
I am not sure why when I look to my clusters in QDEC I get a different p value
for the uncorrected results sig.mgh that the one cached with the --cwpvalthresh
.999 for example from QDEC for one cluster rostralmiddlefrontal in sig.mgh I
got p =0.00338 while with the catche option and --cwpvalthresh .999 I got cwp
0.75890.
I am doing something wrong?
2) If I know the MNI coordinates how I can get the location I mean the
segmentation or annotation location of my clusters to the nears cortical label?
Many thanks.
AK
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
