Cloud, in this instance, the documentation is ahead of what is available in the public release. talairach_with_skull_2.lta will be available in the next release. in the current release (5.1, and prior), talairach_with_skull.lta is created in two places: during skullstrip, and during the skull-lta stage. in principle they were supposed to be identical, in practice they werent, and the lta created by the skull-lta stage it seemed would sometimes produce a better skullstrip than that created in the skullstrip stage, hence the necessity to separate them in naming. you can tell which is which by looking at the file creation time in the recon-all.log
Nick On Fri, 2012-01-27 at 12:53 -0800, cloud.c...@me.com wrote: > In > article http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/SkullStripFix, it > is mentioned that talairach_with_skull_2.lta is created during autorecon2, > and that it can be useful when troubleshooting skull-strips, however I do not > find talairach_with_skull_2.lta in the mri/transforms directory of any of my > subjects. Has the processing been altered since the creation of this article > or is my data incomplete? If incomplete, why? > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
