can you load the lh.sphere in tksurfer? I'm not sure it is the mgz file
that is the problem. Maybe your partition filled up and the sphere file
isn't complete?
On Fri, 20 Jan
2012, Arno Klein wrote:
dear doug,
sadly, no dice.
cheers,
@rno
On Fri, Jan 20, 2012 at 4:45 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>
wrote:
Try doing it in matlab, so
a = MRIread('orig.mgz');
MRIwrite(a,'orig.mgz');
doug
Arno Klein wrote:
dear doug,
i am using FS v5.1 now but ran the 20 oasis subjects
through FS v5.0. i am only having this trouble for
one of the subjects.
after the mri_convert workaround i am still getting
the same memory allocation error.
cheers,
@rno
On Fri, Jan 20, 2012 at 4:23 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>>
wrote:
This is a strange problem we've been having with some mgz
files
that were generated during a short period of time last summer
when
there was a bug in the mgz writing code. What version of FS
are
you using? In the current dev version, this should not be a
problem. A work-around is to convert the orig.mgz to itself
using
mri_convert in the dev environment, ie,
mri_convert orig.mgz orig.mgz
doug
Arno Klein wrote:
i get the following memory allocation error for only one
out
of 20 oasis subjects that i processed with freesurfer 5.1
on
an ubuntu 11.10 machine with 24gb memory:
mris_register -curv subjects/OAS1_0061_MR1/surf/lh.sphere
templates_freesurfer/lh.KKI_2.tif
subjects/OAS1_0061_MR1/surf/lh.sphere_to_KKItemplate.reg
using smoothwm curvature for final alignment
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp
$
$Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp
$
reading surface from
subjects/OAS1_0061_MR1/surf/lh.sphere...
TAGskip: tag=1717658469, failed to calloc 1868656640
bytes!
Cannot allocate memory
system information:
FREESURFER_HOME: /usr/local/freesurfer
Build stamp:
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0
Debian version: wheezy/sid
Kernel info: Linux 3.0.0-14-generic x86_64
cheers,
@rno
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Phone Number: 617-724-2358 Fax: 617-726-7422
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