dear doug,
sadly, no dice.
cheers,
@rno
On Fri, Jan 20, 2012 at 4:45 PM, Douglas N Greve
<gr...@nmr.mgh.harvard.edu>wrote:
> Try doing it in matlab, so
> a = MRIread('orig.mgz');
> MRIwrite(a,'orig.mgz');
>
> doug
>
> Arno Klein wrote:
>
>>
>> dear doug,
>>
>> i am using FS v5.1 now but ran the 20 oasis subjects through FS v5.0. i
>> am only having this trouble for one of the subjects.
>>
>> after the mri_convert workaround i am still getting the same memory
>> allocation error.
>> cheers,
>> @rno
>>
>>
>>
>> On Fri, Jan 20, 2012 at 4:23 PM, Douglas N Greve <
>> gr...@nmr.mgh.harvard.edu
>> <mailto:gr...@nmr.mgh.harvard.**edu<gr...@nmr.mgh.harvard.edu>>>
>> wrote:
>>
>> This is a strange problem we've been having with some mgz files
>> that were generated during a short period of time last summer when
>> there was a bug in the mgz writing code. What version of FS are
>> you using? In the current dev version, this should not be a
>> problem. A work-around is to convert the orig.mgz to itself using
>> mri_convert in the dev environment, ie,
>>
>> mri_convert orig.mgz orig.mgz
>>
>> doug
>>
>> Arno Klein wrote:
>>
>>
>> i get the following memory allocation error for only one out
>> of 20 oasis subjects that i processed with freesurfer 5.1 on
>> an ubuntu 11.10 machine with 24gb memory:
>>
>> mris_register -curv subjects/OAS1_0061_MR1/surf/**lh.sphere
>> templates_freesurfer/lh.KKI_2.**tif
>> subjects/OAS1_0061_MR1/surf/**lh.sphere_to_KKItemplate.reg
>> using smoothwm curvature for final alignment
>> $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
>> $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $
>> reading surface from subjects/OAS1_0061_MR1/surf/**lh.sphere...
>> TAGskip: tag=1717658469, failed to calloc 1868656640 bytes!
>> Cannot allocate memory
>>
>> system information:
>>
>> FREESURFER_HOME: /usr/local/freesurfer
>> Build stamp: freesurfer-Linux-centos4_x86_**64-stable-pub-v5.1.0
>> Debian version: wheezy/sid
>> Kernel info: Linux 3.0.0-14-generic x86_64
>>
>> cheers,
>> @rno
>>
>> ------------------------------**------------------------------**
>> ------------
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>>
>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>>
>>
>> -- Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> gr...@nmr.mgh.harvard.edu
>> <mailto:gr...@nmr.mgh.harvard.**edu<gr...@nmr.mgh.harvard.edu>
>> >
>> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422
>> <tel:617-726-7422>
>>
>> Bugs:
>> surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>
>> <http://surfer.nmr.mgh.**harvard.edu/fswiki/**BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>> >
>> FileDrop:
>> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>
>> <http://www.nmr.mgh.harvard.**edu/facility/filedrop/index.**html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>> >
>>
>>
>>
>>
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>> contains patient information, please contact the Partners
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358 Fax: 617-726-7422
>
> Bugs:
> surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> FileDrop:
> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>
>
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