Hi I use this script to extract mean cortical thickness. The script is available under GNU GPL3.
Knut J Bjuland > From: souheil.in...@nih.gov > To: freesurfer@nmr.mgh.harvard.edu > Date: Mon, 16 Jan 2012 23:04:09 -0500 > Subject: [Freesurfer] Newbie question: mean/stddev for volumes and > thicknesses in an atlas > > Hi All, > > I have a very small set of patients and I would like to compare the volumes > of subcortical structures and thickness across the cortex to those of a large > normative set. I don't need all the underlying data, just means and standard > deviations. Is such a set of measures available? > > Thanks, > Souheil > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
global_thickness.sh
Description: application/shellscript
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
