Hi Paolo, I think you'll find this tutorial has what you are looking for: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Diffusion#ResamplingStructuralDataintheDiffusionSpace Allison
On Tue, 10 Jan 2012, paolo wrote: > Hi, i have a problem: > > i have a file aseg+aparc.mgz, generated by freesurfer, and i would like > to visualize it with trackvis (i mostly need the aparc part). the > problem is, that if i just convert it to nifti, it seems to be in a > different reference frame. > > i tried to read the freesurfer coordinate tutorial, but i couldnt > figure out what's the right way to convert a freesurfer mgz into > trackvis coordinate space.. > > does anyone have a clue? > > thanks, Paolo > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
