When you run your original mri_vol2vol command, add --reg-final reg.final.dat. You can then use
mri_vol2vol --reg reg.final.dat --mov yourmovvol.nii --targ yourvolume.mni305.nii --inv --o new.yourmovvol.nii to map it back to the moveable space doug Andrew Dumas wrote: > Thanks, Doug! One more question-- How can I invert this registration? I > want to move the volumes in the common space back to each original > subject space. mri_vol2vol won't accept a --targ when I specify --tal, > but I'd like to use --inv. > > Andrew > > On Tue, 2011-12-20 at 14:58 -0500, Douglas N Greve wrote: > >> Hi Andrew, use mri_vol2vol with the --tal --talres 2 or 2mm option (or >> --talres 1 for 1mm isotropic) option. This will put it into an MNI305 >> space. So something like >> >> mri_vol2vol --reg register.dat --mov yourvolume.nii --tal --talres 2 --o >> yourvolume.mni305.nii >> >> If you did not create the register.dat with bbregister, I would strongly >> suggest it. It works really well on the partial volume files. If you do, >> you should specify your current register.dat as the init registration. >> >> doug >> >> Andrew Dumas wrote: >> >>> Hi, >>> >>> I'm trying to move a bunch of partial FOV functional images (occipital >>> cortex only with oblique coronal slices) into common space. For each >>> subject, I have a registration file (register.dat) to register >>> functional images to anatomicals, and I'd like to incorporate the >>> talairach.xfm registration so that I have a matrix that registers the >>> functional images to the mni305 volume. I've been using the following, >>> but registrations aren't coming out properly: >>> >>> mri_matrix_multiply -im register.dat -iim >>> <subject>/mri/transforms/talairach.xfm -om reg_to_common.dat >>> >>> I'm checking them using tkregister2, but the results don't look great. >>> Is there a better/easier way to do this? Thanks! >>> >>> Andrew >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
