hey mike, take a look at:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mc-bbr cheers, satra On Mon, Dec 19, 2011 at 2:04 AM, Michael Waskom <mwas...@stanford.edu>wrote: > Hi Doug, > > Is it possible to use the bbregister parameters to resample a functional > image such that it is in register with the anatomical image but retains the > epi geometry? I actually don't care so much about the epi-anat > registration, but what I would like to be able to do is motion correct and > otherwise preprocess my timeserieses within session* and then move > different sessions into a common volumetric space for analysis. As I have > great faith in bbregister, ideally the transformation would be determined > with this method (I suspect it is superior to picking a slice from one of > the sessions to use as a motion correction target across all sessions). > Additionally, I would prefer not to upsample the source voxels either into > 1x1x1 anatomical geometry or to surface vertices. Unfortunately, my affine > understanding isn't deep enough for me to figure this out myself. > > Does that make sense, and (if so) do you have any ideas? > > Thanks! > Michael > > * Here i use "session" in the sense of "run", which is different I think > from FSFast terminology so apologies for any confusion. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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