Hi,
I'm using FSL 4.1.4
On Mon, Dec 12, 2011 at 12:43 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu> wrote:
>
> Hi Scott - Which version of FSL are you using? I cannot replicate this
> behavior of fslstats on our data.
>
> Thanks,
> a.y
>
>
> On Mon, 12 Dec 2011, Scott Hayes wrote:
>
>> Hi,
>> I have received the following error message (copied from trac-all.log
>> file).
>>
>> fslstats -t /Volumes/RAID_4TB/futhink/nc331_recon/dmri/dwi.nii.gz -k
>>
>> /Volumes/RAID_4TB/futhink/nc331_recon/dlabel/diff/White-Matter++.bbr.nii.gz
>> -m -s | awk '{print $1/$2}' >
>> /Volumes/RAID_4TB/futhink/nc331_recon/dmri/dwi_snr.txt
>> ** ERROR (nifti_image_read): failed to find header file for '-t'
>> ** ERROR: nifti_image_open(-t): bad header info
>> Error: failed to open file -t
>> ERROR: Could not open image -t
>> Image Exception : #22 :: Failed to read volume -t
>> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
>>
>>
>> The file (dwi.nii.gz) exists in the correct location, and appears to
>> have the correct number of frames (60 directions + 10 b0).
>> We scan on a Siemens 3T tim trio. I unpack the data using
>> unpacksdcmdir and I specify the resulting .mgz file in the tracula
>> config file. Running locally on mac os 10.6.8.
>>
>> Any suggestions would be appreciated.
>> Thanks,
>> Scott
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>>
>>
>
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--
Scott M. Hayes, Ph.D.
Memory Disorders Research Center
Neuroimaging Research Center
VA Boston Healthcare System
Assistant Professor
Department of Psychiatry
Boston University School of Medicine
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