Dear Freesurfers,
I ran into an issue while trying to preprocess some resting state data. As
I wished to use the first slice to correct for motion, I typed in this
command : preproc-sess -s 5167/ -fsd bold -stc down -surface fsaverage lhrh
-mni305-2mm -fwhm 6 -*per-session. *
The error message was the following :
......
stc-sess Done
5167 To Surface -----------------------------
rawfunc2surf-sess -fwhm 6 -s 5167 -d /Applications/freesurfer/sessions -fsd
bold -stc down -update
instem fmcpr.down
outstem fmcpr.down.sm6.fsaverage.hemi
------------------------------
1/1 5167
1/1 5167 007 lh ---------
Fri Nov 25 09:39:53 CET 2011
ERROR: could not determine file for
/Applications/freesurfer/sessions/5167/bold/007/fmcpr.down
When I use the middle slice as a reference slice with the command *-per-run
*I don't have any problems.
Does any one know where this is coming from? I see some people already had
the same issue a while ago, does any one know if a solution was found?
Cheers,
Elisa Scariati
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