Hi Bente, so you did process subjectname_pre_nii and subjectname_post_dicom independently with freesurfer (recon-all)? You should have those directories in you subjects dir.
I have never seen the error you are getting. Can you send me the full recon-all.log to see at what step it is failing? In the meantime you can look at the orig.mgz in the subjectname_template/mri dir (and other images, nu.mgz, brainmaks.mgz, norm.mgz) if they look OK. Thanks, Martin On Thu, 2011-11-17 at 14:55 -0500, bbru...@bidmc.harvard.edu wrote: > Dear FS-experts, > > I'm doing a longitudinal comparison of cortical thickness and am therefore > following the steps of the longitudinal stream on the freesurfer wiki. > > I've created templates for all of my subjects but one, for which I received > an error message trying to create the template (or base). > > > This is the command: > > recon-all -base subjectname_template -tp subjectname_pre_nii -tp > subjectname_post_dicom -all > > > This is the error message I receive: > > recon-all -s subjectname_template exited with ERRORS at Wed Nov 16 18:19:57 > EST 2011 > > > When I look in the logfile, I read this line (repeated): > > mhtVoxelList_Add(139, 172, 245, 85437): complete list too big! > etc. > > Is this something I can fix? Are my pre and post files not compatible? > I hope you can help me, thanks in advance! > > Bente > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
