To check it with tkregister2, you can: tkregister2 --mov $FREESURFER_HOME/average/RB_all_2008-03-26.gca \ --targ ../brainmask.mgz --lta-inv talairach.lta --reg talairach.lta.reg.dat \ --surfs --s $subject
I don't have anyway to actually save the result at this time. doug Jeff Sadino wrote: > Hello, > > I have several subjects with bad surfaces in fs 5.0.0. After checking > their talairach.lta file, these transforms are all bad. I tried using > tkregister2 to create a good talairach.lta file, but it just wasn't > working. I tried rerunning these subjects in fs 5.1.0, and their > talairach.lta files are all good. Can I just copy the fs510 > talairach.lta file to the fs500 subject folder, or will that cause > other issues that are not obvious? As a side note, what would the > tkregister2 command be to create the lta file? > > Thank you, > Jeff Sadino > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
