Hi Don, I found the problem (which is that it skips loading the target surface when the source and target subjects are the same; it now verifies that the ico order is also the same and loads the target surface if not). You can get the new version from here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_surf2surf Alternatively, you can use the fsaverage3 and fsaverage4 average subjects ($FREESURFER_HOME/subjects) and skip the ico stuff all together (it should give identical results since the average subjects have the ico as their sphere.reg).
doug Don Hagler wrote: > I am trying to use mri_surf2surf to resample surface data in mgh > format from ico4 to ico3. There is an apparent bug, however, in that > the output file has the same dimensions as the input file despite > srcicoorder = 4 and trgicoorder = 3. I am using ico for both > srcsubject and trgsubject. This problem occurs in versions 4.5.0 and > 5.1.0 (and presumably other versions as well). I have the same problem > when trying to go from ico4 to ico7. > > command line: > mri_surf2surf --srcsubject ico --trgsubject ico --srcicoorder 4 > --trgicoorder 3 --sval dSPM_cond17-lh.mgh --tval > dSPM_cond17_ico3-lh.mgh --hemi lh > > output: > srcsubject = ico > srcval = dSPM_cond17-lh.mgh > srctype = > trgsubject = ico > trgval = dSPM_cond17_ico3-lh.mgh > trgtype = > srcsurfreg = sphere.reg > trgsurfreg = sphere.reg > srchemi = lh > trghemi = lh > frame = 0 > fwhm-in = 0 > fwhm-out = 0 > label-src = (null) > label-trg = (null) > Reading icosahedron > /usr/pubsw/packages/freesurfer/RH4-x86_64-R450/lib/bem/ic4.tri > Source Ico Order = 4 > Loading source data > INFO: trgsubject = srcsubject > Saving target data > > > A work-around is to specify the trgsubject as an "average" subject in > the desired (e.g. ico 3) resolution. > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
