Hi Allan and Joshua, The hippocampal subfield segmentation really just uses a few output files generated by the usual FreeSurfer volumetric stream, so the short answer is that it should be perfectly possible to use 5.1 to do hippocampal subfield segmentation on FreeSurfer results processed with 5.0.
Of course, 5.1 likely yields slightly different FreeSurfer ouput files than 5.0, so that the hippocampal subfield segmentation that relies on those will be different from a "fresh" run of 5.1 accordingly... Hope this helps, Koen On Wed, Nov 2, 2011 at 1:28 PM, Joshua Lee <jki...@ucdavis.edu> wrote: > Thats an interesting suggestion, givien my recently reported issues with the > talairach in FreeSurfer 5.1. > - > Joshua Lee > Graduate Student > Center for Mind and Brain & > Department of Psychology > University of California, Davis > 530.747.3805 > > > On Wed, Nov 2, 2011 at 11:41 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: >> >> I believe so, but Koen is the one who would know for sure >> >> Bruce >> On Wed, 2 Nov 2011, Alan Francis wrote: >> >>> Hello Bruce et al, >>> >>> I have a dataset processed in 5.0. Can I use the Hippocampal Sub-Field >>> Segmentation tools of 5.1 to process these? >>> >>> thanks so much, >>> >>> Alan >>> >>> BIDMC/ Psychiatry >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
