Hi Martina, the web page was not quite accurate. To see all clusters, add --cwpvalthresh 0.999. I've updated the web page with this information. Note that the max significance in a cluster has no bearing on the significance of the cluster itself.
doug Martina Ly wrote: > Hi freesurfers, > According to the page on group > analysis(http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis), > the cluster summary contains ALL clusters, regardless of their > significance. However, a paracentral cluster (see figure attached) had > a uncorrected p value of 10^-6 but doesn't show up in > mz-c.sig.cluster.summary even after I lowered the cwpvalthresh to 0.1 > in a cwp simulation. > > Any advice or suggestions would be greatly appreciated. > > Many thanks, > Martina > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
