you can use the --annot flag to aparc2feat to specify a custom annotation. doug
Michelle Umali wrote: > Hi Freesurfers, > I would like to make a custom V1 and V2 label based on my fieldsign > results and then later use aseg2feat and fslmaths to make binary masks > based on this label to later use in an FSL feat analysis. > > I made the additions to a a modified (and differently named) version > of each subject's aparc.annot.ctab, marked vertices and used custom > fill in tksurfer, removed the existing labels. I know i have to use > the new labels and export a new annotation file, but can aparc2feat > use this new annotation file or does it require the standard > annotation files automatically generated from recon-all? > > > Thanks. > Michelle > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
