Yes, but --seg in mri_annotation2label --subject bert --hemi lh --seg saida.mgz produces a volume and not a surface. --------------------------------------------------------------------- Pedro Paulo de Magalhães Oliveira Junior Netfilter & SpeedComm Telecom -- www.netfilter.com.br -- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441
On Tue, Oct 11, 2011 at 13:12, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > Have you tried using mri_annotation2label with the --seg output option? > doug > > Michael Waskom wrote: > >> If you know Python, you can likely do this pretty easily with tools from >> the PySurfer package: http://pysurfer.github.com/ >> >> (Check out surfer.io.read_annotation). >> >> If you're just using the io routines, you won't need the somewhat heavy >> Mayavi visualization dependencies. You should be able to read in and >> manipulate surfaces/annotations just with numpy. >> Best, >> Michael >> >> 2011/10/8 Bruce Fischl <fis...@nmr.mgh.harvard.edu <mailto: >> fis...@nmr.mgh.**harvard.edu <fis...@nmr.mgh.harvard.edu>>> >> >> >> it wouldn't be that hard to put something together if you want to >> avoid matlab. Spec out what you need and send me a sample, maybe >> on Bert >> >> Bruce >> >> On Sat, 8 Oct 2011, Pedro Paulo de Magalhães Oliveira Junior wrote: >> >> Thanks. >> >> I suppose I can't do this without matlab. Right? >> >> -- iOS 5.0 >> >> Em 08/10/2011, às 19:29, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu >> <mailto:fis...@nmr.mgh.**harvard.edu <fis...@nmr.mgh.harvard.edu>>> >> escreveu: >> >> >> there is a write_annotation.m file you can use >> On Sat, 8 Oct 2011, Anderson Winkler wrote: >> >> ops, it seems the comments inside the dpxwrite.m no >> longer reflect what it does. You probably don't need >> this, but anyway, the version attached is more up-to-date. >> Anderson >> On 08/10/11 17:28, Anderson Winkler wrote: >> Hi Pedro, >> >> There is probably a way to do that using FS tools >> from the command line, but the attached script should >> do the same. The result is a "data-per-vertex" file, which >> is the same as the .asc files from mris_convert. >> There is no geometry input, hence the vertex >> coordinates are all set to (0,0,0). >> >> Hope it helps! >> >> All the best, >> >> Anderson >> >> On 08/10/11 17:17, Pedro Paulo de Magalh�es >> Oliveira Junior wrote: >> I need to create a file where I have the >> parcellation value (structure name) per vertex. >> I've tried�mris_convert --annot >> /Applications/freesurfer/ >> subjects/bert/label/lh.aparc. annot >> /Applications/freesurfer/ subjects/bert/surf/lh.pial >> parc.asc >> But I get the error:�ERROR: unknown file annot file >> type specified for output: saida.asc >> Has someone done this before? >> Thanks >> ------------------------------ >> ------------------------------ --------- >> Pedro Paulo de Magalh�es Oliveira Junior >> Netfilter & SpeedComm Telecom -- www.netfilter.com.br >> <http://www.netfilter.com.br> >> >> -- For mobile:�http://itunes.apple. >> com/br/artist/netfilter/ id365306441 >> >> <http://itunes.apple.com/br/**artist/netfilter/id365306441<http://itunes.apple.com/br/artist/netfilter/id365306441> >> > >> ______________________________ _________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> >> <mailto:freesur...@nmr.mgh.**harvard.edu<Freesurfer@nmr.mgh.harvard.edu> >> > >> https://mail.nmr.mgh.harvard. edu/mailman/listinfo/ >> freesurfer >> >> <https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/** >> freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> > >> The information in this e-mail is intended only for >> the person to whom it is >> addressed. 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If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> ------------------------------**------------------------------** >> ------------ >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 Fax: 617-726-7422 > > Bugs: > surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: > www.nmr.mgh.harvard.edu/**facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > >
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