to correct the pial surface for incorrect assignment of head tissue, I edit the brainmask.mgz. Hope that's correct...
Thanks, Torsten On Tue, 2011-10-04 at 09:07 -0400, Bruce Fischl wrote: > and which volume are you editing? > On Tue, 4 Oct 2011, Torsten Ruest wrote: > > > Hi Bruce, > > > > thanks for your quick reply. No I am editing using the following > > command: > > > > tkmedit PARTICIPANT_FOLDER wm.mgz rh.white -aux brainmask.mgz > > -aux-surface lh.white > > > > Thanks, > > > > Torsten > > > > On Mon, 2011-10-03 at 11:22 -0400, Bruce Fischl wrote: > >> what pial edits to you want to undo specifically? Was it just edits to the > >> brain.finalsurfs.mgz volume? > >> > >> > >> On Mon, 3 Oct 2011, Torsten Ruest wrote: > >> > >>> Hi there, > >>> > >>> I think there is an option to remove all edits that have been > >>> incorporated using recon2 -clean. > >>> > >>> Is there a chance that I can selectively undo all incorporated pial > >>> edits (ie that have been incorporated by running "recon-all -subject > >>> TEST -autorecon2 > TEST-2.log")? > >>> > >>> Thanks very much in advance, > >>> > >>> Torsten > >>> > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >>> > >>> > >> > >> > >> The information in this e-mail is intended only for the person to whom it > >> is > >> addressed. If you believe this e-mail was sent to you in error and the > >> e-mail > >> contains patient information, please contact the Partners Compliance > >> HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to you in > >> error > >> but does not contain patient information, please contact the sender and > >> properly > >> dispose of the e-mail. > >> > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
