You can run mri_glmfit-sim on the QDEC output directory. Or you can run the simulation from within QDEC. Both will give you this output file. doug
Antonella Kis wrote: > Dear Doug, > > I got this results while I was running the GLM simulation but I wonder > if there is a way to get under QDEC (when I run QDEC from the > interface) and I am using the FDR and Monte Carlo simulation. In this > case I am not getting any output as in GLM from which I got the > csdbase.y.ocn.dat. > While using QDEC I can get the thickness on the graph which is one > point in the cluster, not the mean of the cluster. > Is there a way to change the cluster into binary data (I am not sure) > and then extract the mean thickness of that cluster or how I can get > under QDEC the average thickness of the clusters? > > > Many thanks, > Antonella > ------------------------------------------------------------------------ > *From:* Douglas N Greve <gr...@nmr.mgh.harvard.edu> > *To:* Antonella Kis <ator...@yahoo.com> > *Cc:* "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu> > *Sent:* Monday, September 26, 2011 10:23 AM > *Subject:* Re: [Freesurfer] QDEC stats table output > > Will this work (this is from running mri_glmfit-sim --help, which has > even more info): > > csdbase.y.ocn.dat - this is a summary of the input (y) over each > cluster. It has a column for each cluster. Each row is a subject. The > value is the average of the input (y) in each cluster. This is a > simple text file. > > > Antonella Kis wrote: > > > > > > Hi, > > After running QDEC, I would like to output in a table the average > > value for the cortical thickness within each clusters. I know this is > > a dependent variable and I can see the values on the plot but is there > > a way that I can get this values in a table ? > > Thanks, > > Antonella > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
