Glad to hear it Bruce
On Sep 25, 2011, at 6:16 PM, Michelle Umali <mumal...@gmail.com> wrote: > Dear Bruce and the Freesurfers, > I had to update my ATI graphics driver and set the doublebufferflag to 1. > > Everything is working just fine. > > Thanks for your help. > Michelle > > > > On Sun, Sep 25, 2011 at 2:49 PM, Michelle Umali <mumal...@gmail.com> wrote: > Hi Bruce and the Freesurfers, > Sadly instead of .028 seconds, it takes ~60 second for a single 90 degree > rotation. > > Thanks for helping. > Michelle > > Here is the screen output: > > BOTANICA:~> tksurfer ld07 lh inflated > subject is ld07 > hemi is lh > surface is inflated > surfer: current subjects dir: /usr/local/freesurfer/subjects > surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /home/michelle > checking for nofix files in 'inflated' > Reading image info (/usr/local/freesurfer/subjects/ld07) > Reading /usr/local/freesurfer/subjects/ld07/mri/orig.mgz > surfer: Reading header info from > /usr/local/freesurfer/subjects/ld07/mri/orig.mgz > surfer: vertices=156145, faces=312286 > surfer: single buffered window > surfer: tkoInitWindow(ld07) > surfer: using interface /usr/local/freesurfer/tktools/tksurfer.tcl > Reading /usr/local/freesurfer/tktools/tkm_common.tcl > Reading /usr/local/freesurfer/tktools/tkm_wrappers.tcl > Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl > Reading /usr/local/freesurfer/tktools/tkUtils.tcl > Successfully parsed tksurfer.tcl > reading white matter vertex locations... > % surfer: curvature read: min=-3.127128 max=2.364444 > > > > > > On Sun, Sep 25, 2011 at 2:35 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > Hi Michelle > > 28063 microseconds = 28milliseconds = 0.028 sec which is quite fast. Is that > what you observe? Do you get any errors when you start tksurfer? Can you > paste the screen output of tksurfer in an email? I'm not sure what's going > on. When Nick/Krish/Ruopeng start reading email tomorrow, maybe they can help > Bruce > > > > On Sun, 25 Sep 2011, Michelle Umali wrote: > > Hi Bruce, > Pressing return after entering the angle doesn't help :-) > > Still extremely slow: rotations, loading labels, and loading annotation. > > > Do you have any suggestions for a fix? > > Thanks. > Michelle > > > On Sun, Sep 25, 2011 at 1:59 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > When you type in a different angle make sure you hit return. Tk > is strange that way > > > > On Sep 25, 2011, at 1:50 PM, Michelle Umali <mumal...@gmail.com> > wrote: > > Hi Bruce, > I got 28063 microseconds per iteration. No, I'm not > running remotely. > Also, no matter what angle I choose, the rotation is > always by 90 degrees. > > Thanks. > Michelle > > On Sun, Sep 25, 2011 at 1:39 PM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu> wrote: > Try typing > > time redraw > > At the tcl % prompt. Something sounds like it is very > wrong as it should be less than a second, not a minute. > You aren't running over vnc or something, are you? > > > > On Sep 25, 2011, at 1:28 PM, Michelle Umali > <mumal...@gmail.com> wrote: > > Dear Bruce and the Freesurfers, > > It turns out that the hemisphere does rotate, > but only if I press the same button again > after at least a minute or so. Then I have to > wait for a while before I can press another > rotation button. Do I maybe need to do any > display setup for using hardware acceleration > under Ubuntu? > > Thanks. > Michelle > > On Sun, Sep 25, 2011 at 1:16 PM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu> wrote: > nope, nothing else should be > required. Did you push any > "rotate" buttons first? > > On Sun, 25 Sep 2011, Michelle Umali wrote: > > Dear Freesurfers, > I have recently installed > Freesurfer 5.1 and FSL 4.1.4 on a > linux machine. > When I run tksurfer, I can't > rotate the hemisphere. It will > show the > curvature, but the hemisphere just > won't turn. I was able to do this > through virtual box on my windows > laptop. > > Is there another software > package/toolbox that is needed? > Is either Matlab > or AFNI required as well? > > Thanks. > Michelle > > > > > > The information in this e-mail is intended > only for the person to whom it is > addressed. If you believe this e-mail was sent > to you in error and the e-mail > contains patient information, please contact > the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If > the e-mail was sent to you in error > but does not contain patient information, > please contact the sender and properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
