Hi Bruce and the Freesurfers, Sadly instead of .028 seconds, it takes ~60 second for a single 90 degree rotation.
Thanks for helping. Michelle Here is the screen output: BOTANICA:~> tksurfer ld07 lh inflated subject is ld07 hemi is lh surface is inflated surfer: current subjects dir: /usr/local/freesurfer/subjects surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /home/michelle checking for nofix files in 'inflated' Reading image info (/usr/local/freesurfer/subjects/ld07) Reading /usr/local/freesurfer/subjects/ld07/mri/orig.mgz surfer: Reading header info from /usr/local/freesurfer/subjects/ld07/mri/orig.mgz surfer: vertices=156145, faces=312286 surfer: single buffered window surfer: tkoInitWindow(ld07) surfer: using interface /usr/local/freesurfer/tktools/tksurfer.tcl Reading /usr/local/freesurfer/tktools/tkm_common.tcl Reading /usr/local/freesurfer/tktools/tkm_wrappers.tcl Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl Reading /usr/local/freesurfer/tktools/tkUtils.tcl Successfully parsed tksurfer.tcl reading white matter vertex locations... % surfer: curvature read: min=-3.127128 max=2.364444 On Sun, Sep 25, 2011 at 2:35 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Michelle > > 28063 microseconds = 28milliseconds = 0.028 sec which is quite fast. Is > that what you observe? Do you get any errors when you start tksurfer? Can > you paste the screen output of tksurfer in an email? I'm not sure what's > going on. When Nick/Krish/Ruopeng start reading email tomorrow, maybe they > can help > Bruce > > > > On Sun, 25 Sep 2011, Michelle Umali wrote: > > Hi Bruce, >> Pressing return after entering the angle doesn't help :-) >> >> Still extremely slow: rotations, loading labels, and loading annotation. >> >> >> Do you have any suggestions for a fix? >> >> Thanks. >> Michelle >> >> >> On Sun, Sep 25, 2011 at 1:59 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> When you type in a different angle make sure you hit return. Tk >> is strange that way >> >> >> >> On Sep 25, 2011, at 1:50 PM, Michelle Umali <mumal...@gmail.com> >> wrote: >> >> Hi Bruce, >> I got 28063 microseconds per iteration. No, I'm not >> running remotely. >> Also, no matter what angle I choose, the rotation is >> always by 90 degrees. >> >> Thanks. >> Michelle >> >> On Sun, Sep 25, 2011 at 1:39 PM, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> wrote: >> Try typing >> >> time redraw >> >> At the tcl % prompt. Something sounds like it is very >> wrong as it should be less than a second, not a minute. >> You aren't running over vnc or something, are you? >> >> >> >> On Sep 25, 2011, at 1:28 PM, Michelle Umali >> <mumal...@gmail.com> wrote: >> >> Dear Bruce and the Freesurfers, >> >> It turns out that the hemisphere does rotate, >> but only if I press the same button again >> after at least a minute or so. Then I have to >> wait for a while before I can press another >> rotation button. Do I maybe need to do any >> display setup for using hardware acceleration >> under Ubuntu? >> >> Thanks. >> Michelle >> >> On Sun, Sep 25, 2011 at 1:16 PM, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> wrote: >> nope, nothing else should be >> required. Did you push any >> "rotate" buttons first? >> >> On Sun, 25 Sep 2011, Michelle Umali wrote: >> >> Dear Freesurfers, >> I have recently installed >> Freesurfer 5.1 and FSL 4.1.4 on a >> linux machine. >> When I run tksurfer, I can't >> rotate the hemisphere. It will >> show the >> curvature, but the hemisphere just >> won't turn. I was able to do this >> through virtual box on my windows >> laptop. >> >> Is there another software >> package/toolbox that is needed? >> Is either Matlab >> or AFNI required as well? >> >> Thanks. >> Michelle >> >> >> >> >> >> The information in this e-mail is intended >> only for the person to whom it is >> addressed. If you believe this e-mail was sent >> to you in error and the e-mail >> contains patient information, please contact >> the Partners Compliance HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If >> the e-mail was sent to you in error >> but does not contain patient information, >> please contact the sender and properly >> dispose of the e-mail. >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> ______________________________**_________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> >> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> >>
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