Hi Surfers:
We have been coming
across several gray matter regions that are not included within the pial
surface (red line) when it should be (e.g., very anterior parts of the
temporal lobe). From my understanding of similar posts on the forum, it
seems that there isn't a way to add this region to the pial surface so
that the missing brain matter is included. We have tried using the clone
tool to fill in this region, as per the tutorial and have experimented
with this tool using the tutorial data. I followed the steps in the
tutorial but could not observe any changes when the middle button was
selected. Does anyone have any ideas on how to troubleshoot this
issue? Can someone please explain to me why this is not possible? Also
how does Freesurfer determine what regions to include within the pial
surface? If there is a way that has been developed recently, please
enlighten me.
-Jing
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