I am also using dcm2nii and running recon-all with the original image. It is working ok so far.
Alfredo > Date: Fri, 2 Sep 2011 12:30:26 -0400 > From: gr...@nmr.mgh.harvard.edu > To: cvalen...@linkdx.com.co > CC: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] dcm2nii and recon all > > I have no idea, but probably the original. > doug > > Carolina Valencia wrote: > > Dear FS' users, > > > > I have a 3D T1 from a GE scanner which I convert with dcm2nii to use > > it with recon-all, but I got 3 images: > > o -- original > > oo -- orthogonal > > co -- cropped image > > > > Which I should use to run the command recon-all? > > > > thanks! > > > > Carolina > > ------------------------------------------------------------------------ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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