Have you tried mri_binarize?
On Aug 30, 2011, at 8:53 AM, "Burzynska, Aga" <burzyn...@mpib-berlin.mpg.de> wrote: > Dear experts, > I cannot find a simple way to threshold my sig.mgh file from a functional > group analysis (the file is in the fsaverage space). I would like to binarize > it and save as a mask to use it with the --mask flag in the mri_glmfit > command (to restrict other analyses to these parts of the cortex. > > I will be very grateful for your help! > > Cheers, > Aga > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
