can you visually inspect the talairach xform in tkmedit and see if it looks correct (or tkregister2)? What format were the images you gave to recon-all? If analyze, make sure that the orientation is correct

cheers
Bruce


On Fri, 19 Aug 2011, Ahmed, F, Me <fah...@sun.ac.za> wrote:

Hello Freesurfers,
 
I got this error on my processing and wondered what the problem may be:
 
Talairach Failure Detection Mon Aug 15 16:26:35 SAST 2011
/mnt/hgfs/VBM/freesurfer_EONCS/EONCS/NN117/mri
 
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
 
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** 
(p=0.0000, pval=0.0000 < threshold=0.0050)
Linux localhost.localdomain 2.6.18-8.1.8.el5 #1 SMP Tue Jul 10 06:50:22 EDT 
2007 i686 i686 i386 GNU/Linux
 
recon-all exited with ERRORS at Mon Aug 15 16:26:35 SAST 2011
 
Any help would be greatly appreciated!
 
Kind regards,
Fatima
 

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