Hi, After update the FS version to 5.1, I follow the Tracula tutorial and run the command trac-all -prep -c $TUTORIAL_DATA/diffusion_tutorial/scripts/dmrirc_single_subject It starts to run but finish with errors:
writing to /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig.nii.gz... Saving bvals and bvecs mri_probedicom --i /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial//Diff001/orig/6-1.dcm > /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dcminfo.dat flip4fsl /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig.nii.gz /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 8 fslswapdim /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig.nii.gz x -y z /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig_flip.nii.gz fslorient: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory INFO: found /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig_flip.mghdti.bvecs /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/bvecs mv -f /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig_flip.mghdti.bvals /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/bvals eddy_correct /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_orig_flip.nii.gz /home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi.nii.gz 0 fslroi: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory fslsplit: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory fslmerge: error while loading shared libraries: libnewimage.so: cannot open shared object file: No such file or directory /bin/rm: no se puede borrar «/home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_tmp????.*»: No existe el fichero o el directorio /bin/rm: no se puede borrar «/home/cvalencia/freesurfer/subjects/Tracula_Tutorial_Public//diffusion_tutorial/Diff001/dmri/dwi_ref*»: No existe el fichero o el directorio Linux cvalencia-Precision-WorkStation-T3400 2.6.35-30-generic-pae #56-Ubuntu SMP Mon Jul 11 21:51:12 UTC 2011 i686 GNU/Linux trac-preproc exited with ERRORS at jue ago 18 10:54:43 COT 2011 any suggestions?? Thanks, Carolina 2011/8/16 Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu> > > Hi Carolina - There's info on the new release and how to install it here: > https://surfer.nmr.mgh.**harvard.edu/fswiki/**ReleaseNotes<https://surfer.nmr.mgh.harvard.edu/fswiki/ReleaseNotes> > > a.y > > > On Tue, 16 Aug 2011, Carolina Valencia wrote: > > Hi FS'users, >> I'm trying to do the Tracula tutorial but after set the configuration file >> I >> run the command trac-all >> cvalencia-Precision-**WorkStation-T3400:~/**freesurfer/subjects/Tracula_* >> *Tutorial >> _Public/diffusion_tutorial> trac-all -help >> trac-all: Command not found. >> I have the version: freesurfer-Linux-centos4-**stable-pub-v5.0.0. >> How I update the to version 5.1? What I have to fix to run trac-all >> command? >> >> Thanks, >> >> Best regards >> >> Carolina >> >> >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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