try running mri_diff on them. The image data should be the same. It's 
probably the difference between the command line gunzip and the libraries

cheers
Bruce
On Mon, 15 Aug 2011, Forrest Sheng Bao 
wrote:

> hi there,
> 
> i noticed a strange problem tonight. I had a .nii.gz file. I used
> mri_convert to convert it into a .mgz file. I also used gzip to unzip the
> .nii.gz file and then used mri_convert again to get another .mgz file. But
> the two .mgz files have different md5 sums. Does anyone know what caused the
> problem? Or is there a problem?
> 
> Cheers, Forrest
> 
>
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