this message indicates the problem: mkdir: cannot create directory `/usr/local/freesurfer/subjects/qdec': Permission denied
you can make the subjects directory writable by typing: cd /usr/local/freesurfer chmod -R a+rwX subjects n. On Mon, 2011-08-15 at 15:36 +0100, rajeev krishnadas wrote: > Hi all, > > > I am new to Freesurfer (and to linux) and appreciate if you could > please help. Just managed to install FS onto Ubuntu 10.10 64 bit. > > > I am going through buckner - tutorial for the group analysis with > Qdec. > > > I am at the step where I have to import the aseg and aparc data. I > clicked on the "generate stats data tables" button - unfortunately an > error showed up. > > --------------------------------------------------------------------------------------------------------------------------------------------- > mkdir -p /usr/local/freesurfer/subjects/qdec/stats_tables/ > mkdir: cannot create directory `/usr/local/freesurfer/subjects/qdec': > Permission denied > ERROR: > In /usr/pubsw/packages/KWWidgets/CVS-vtk520/src/vtkKWTkUtilities.cxx, > line 230 > vtkKWQdecApp (0x36dd3d0): > Script: > vtkTemp3 GenerateStatsDataTables > Returned Error on line 1: > Uncaught exception: command failed: mkdir > -p /usr/local/freesurfer/subjects/qdec/stats_tables/ > > > Stack trace: > Uncaught exception: command failed: mkdir > -p /usr/local/freesurfer/subjects/qdec/stats_tables/ > > > while executing > "vtkTemp3 GenerateStatsDataTables" > ------------------------------------------------------------------------------------------------------------------------------------------------ > > > I was wondering if you could please guide me about what could be the > problem and how to overcome it! I went through the archives and saw a > similar message before, but I did not understand how the person > overcame this problem. > > > Thanks in advance. > > > Rajeev > > > > > -- > Dr Rajeev Krishnadas MBBS, MD, DipNB, MRCPsych|Clinical Lecturer in > Psychological Medicine|Sackler Institute of Psychobiological Research| > Southern General Hospital|Glasgow|G51 4TF|T: +44(0)141 232 7699|F: > +44(0)141 232 7697|M: +44(0)7525343479 > > > http://etanerceptforpsoriasis.moonfruit.com/#/home/4545962633 > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
