Dear Bruce If I use analyze would it effect the results?
Dicoms are preferable because? I have processed about 30 subjects using analyze. I have noticed some cases where surfaces were not done correctly in few regions other than that no major problems. If it makes big difference to use dicom. Should I use par images to transform them into dicom on scanner or is there any other way to do it?. Thanks Ayaz -----Original Message----- From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: Thursday, August 11, 2011 2:10 PM To: Ayaz, Muhammad Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] recon-all and corrected hemispheres Hi Ayaz you are *much* better off avoiding analyze as a format entirely. Can't you give the dicoms right off the scanner to recon-all? cheers Bruce On Thu, 11 Aug 2011, Ayaz, Muhammad wrote: > > Dear All, > > > > I acquired the images using Phillips scanner. I converted the images from > par into analyze using MRIcro. I noticed that images were flipped when I > view them in the axial plane, i.e. when I look at the images on the computer > screen the Right hemisphere (where we tapped the fish oil tablet) is on the > right side of the image. > > > > Should I flip the images before running through the recon-all? > > > > Thanks > > Ayaz > > > The information contained in this message and any attachments is intended > only for the use of the individual or entity to which it is addressed, and > may contain information that is PRIVILEGED, CONFIDENTIAL, and exempt from > disclosure under applicable law. If you are not the intended recipient, you > are prohibited from copying, distributing, or using the information. Please > contact the sender immediately by return e-mail and delete the original > message from your system. > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. The information contained in this message and any attachments is intended only for the use of the individual or entity to which it is addressed, and may contain information that is PRIVILEGED, CONFIDENTIAL, and exempt from disclosure under applicable law. If you are not the intended recipient, you are prohibited from copying, distributing, or using the information. Please contact the sender immediately by return e-mail and delete the original message from your system. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
